loot wont detect my mods through mod organizer 2

[noobwithmods]

so, I am pretty new to pc and modding. I am having a bit of a problem with loot for Fallout NV atm. Right now loot can not detect any of my activated mods through mod organizer 2. I have set all the directories to where they need to be, mo has detected loot and knows where the program is but the only plugins that are seen are the dlcs. i have not really found an answer to this problem anywhere. I have mods like Project Nevada and some graphics mods. The only other plugin loot detects other than the dlc content is an enb that i ofc manually downloaded. If i could get some help that would be much appreciated as i would love to get back to modding fallout nv but i would love it if loot would detect my mods. 

[Leonardo]

I'm fairly sure that LOOT won't work properly when using it via MO2, so try to launch LOOT outside of MO2 and see what happens.